Publications

Found 121 results
2014
B. J. Cafferty and Hud, N. V., Abiotic synthesis of RNA in water: a common goal of prebiotic chemistry and bottom-up synthetic biology., Curr Opin Chem Biol, vol. 22, pp. 146-57, 2014.
I. Mamajanov, MacDonald, P. J., Ying, J., Duncanson, D. M., Dowdy, G. R., Walker, C. A., Engelhart, A. E., ndez, F. M. á, Grover, M. A., Hud, N. V., and F. Schork, J., Ester Formation and Hydrolysis during Wet–Dry Cycles: Generation of Far-from-Equilibrium Polymers in a Model Prebiotic Reaction, Macromolecules, vol. 47, no. 4, pp. 1334 - 1343, 2014.
A. S. Petrov, Bernier, C. R., Hsiao, C., Norris, A. M., Kovacs, N. A., Waterbury, C. C., Stepanov, V. G., Harvey, S. C., Fox, G. E., Wartell, R. M., Hud, N. V., and Williams, L. Dean, Evolution of the ribosome at atomic resolution., Proc Natl Acad Sci U S A, vol. 111, no. 28, pp. 10251-6, 2014.
G. Portella, Germann, M. W., Hud, N. V., and Orozco, M., MD and NMR analyses of choline and TMA binding to duplex DNA: on the origins of aberrant sequence-dependent stability by alkyl cations in aqueous and water-free solvents., J Am Chem Soc, vol. 136, no. 8, pp. 3075-86, 2014.
A. S. Petrov, Bernier, C. R., Gulen, B., Waterbury, C. C., Hershkovits, E., Hsiao, C., Harvey, S. C., Hud, N. V., Fox, G. E., Wartell, R. M., and Williams, L. Dean, Secondary structures of rRNAs from all three domains of life., PLoS One, vol. 9, no. 2, p. e88222, 2014.
M. C. Chen, Cafferty, B. J., Mamajanov, I., Gállego, I., Khanam, J., Krishnamurthy, R., and Hud, N. V., Spontaneous prebiotic formation of a β-ribofuranoside that self-assembles with a complementary heterocycle., J Am Chem Soc, vol. 136, no. 15, pp. 5640-6, 2014.
2013
B. J. Cafferty, Gállego, I., Chen, M. C., Farley, K. I., Eritja, R., and Hud, N. V., Efficient self-assembly in water of long noncovalent polymers by nucleobase analogues., J Am Chem Soc, vol. 135, no. 7, pp. 2447-50, 2013.
E. Kuruvilla, Schuster, G. B., and Hud, N. V., Enhanced nonenzymatic ligation of homopurine miniduplexes: support for greater base stacking in a pre-RNA world., ChemBioChem, vol. 14, no. 1, pp. 45-8, 2013.
S. S. Athavale, J Gossett, J., Bowman, J. C., Hud, N. V., Williams, L. Dean, and Harvey, S. C., In vitro secondary structure of the genomic RNA of satellite tobacco mosaic virus., PLoS One, vol. 8, no. 1, p. e54384, 2013.
C. Hsiao, Lenz, T. K., Peters, J. K., Fang, P. - Y., Schneider, D. M., Anderson, E. J., Preeprem, T., Bowman, J. C., O'Neill, E. B., Lie, L., Athavale, S. S., J Gossett, J., Trippe, C., Murray, J., Petrov, A. S., Wartell, R. M., Harvey, S. C., Hud, N. V., and Williams, L. Dean, Molecular paleontology: a biochemical model of the ancestral ribosome., Nucleic Acids Res, vol. 41, no. 5, pp. 3373-85, 2013.
N. V. Hud, Cafferty, B. J., Krishnamurthy, R., and Williams, L. Dean, The origin of RNA and "My Grandfather's Axe"., Chem Biol, vol. 20, no. 4, pp. 466-74, 2013.
T. M. Parker, Hohenstein, E. G., Parrish, R. M., Hud, N. V., and C Sherrill, D., Quantum-mechanical analysis of the energetic contributions to π stacking in nucleic acids versus rise, twist, and slide., J Am Chem Soc, vol. 135, no. 4, pp. 1306-16, 2013.
C. Hsiao, Chou, I. - C., C Okafor, D., Bowman, J. C., O'Neill, E. B., Athavale, S. S., Petrov, A. S., Hud, N. V., Wartell, R. M., Harvey, S. C., and Williams, L. Dean, RNA with iron(II) as a cofactor catalyses electron transfer., Nat Chem, vol. 5, no. 6, pp. 525-8, 2013.
A. S. Petrov, Bernier, C. R., Hershkovits, E., Xue, Y., Waterbury, C. C., Hsiao, C., Stepanov, V. G., Gaucher, E. A., Grover, M. A., Harvey, S. C., Hud, N. V., Wartell, R. M., Fox, G. E., and Williams, L. Dean, Secondary structure and domain architecture of the 23S and 5S rRNAs., Nucleic Acids Res, vol. 41, no. 15, pp. 7522-35, 2013.

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