Publications

Found 142 results
2006
M. Donohue, Wei, W., Wu, J., Zawia, N. H., Hud, N., De Jesus, V., Schmechel, D., Hettick, J. M., Beezhold, D. H., and Vesper, S., “Characterization of nigerlysin, hemolysin produced by Aspergillus niger, and effect on mouse neuronal cells in vitro.”, Toxicology, vol. 219, no. 1-3, pp. 150-5, 2006.
E. D. Horowitz and Hud, N. V., “Ethidium and proflavine binding to a 2',5'-linked RNA duplex.”, J Am Chem Soc, vol. 128, no. 48, pp. 15380-1, 2006.
H. D. Bean, Anet, F. A. L., Gould, I. R., and Hud, N. V., “Glyoxylate as a Backbone Linkage for a Prebiotic Ancestor of RNA”, Origins Life Evol B, vol. 36, no. 1, pp. 39 - 63, 2006.
H. D. Bean, Anet, F. A. L., Gould, I. R., and Hud, N. V., “Glyoxylate as a backbone linkage for a prebiotic ancestor of RNA.”, Orig Life Evol Biosph, vol. 36, no. 1, pp. 39-63, 2006.
N. V. Hud and Plavec, J., “The Role of Cations in Determining Quadruplex Structure and Stability”, in Quadruplex Nucleic Acids, S. 
 Neidle and Balasubramanian, S., Eds. Cambridge: Royal Soc Chemistry, 2006, pp. 100-130.
I. D. Vilfan, Conwell, C. C., Sarkar, T., and Hud, N. V., “Time study of DNA condensate morphology: implications regarding the nucleation, growth, and equilibrium populations of toroids and rods.”, Biochemistry, vol. 45, no. 26, pp. 8174-83, 2006.
2005
T. Sarkar, Conwell, C. C., Harvey, L. C., Santai, C. T., and Hud, N. V., “Condensation of oligonucleotides assembled into nicked and gapped duplexes: potential structures for oligonucleotide delivery.”, Nucleic Acids Res, vol. 33, no. 1, pp. 143-51, 2005.
N. V. Hud and Vilfan, I. D., “Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size.”, Annu Rev Biophys Biomol Struct, vol. 34, pp. 295-318, 2005.
2004
O. Persil, Santai, C. T., Jain, S. S., and Hud, N. V., “Assembly of an antiparallel homo-adenine DNA duplex by small-molecule binding.”, J Am Chem Soc, vol. 126, no. 28, pp. 8644-5, 2004.
J. T. Petty, Zheng, J., Hud, N. V., and Dickson, R. M., “DNA-templated Ag nanocluster formation.”, J Am Chem Soc, vol. 126, no. 16, pp. 5207-12, 2004.
S. S. Jain, Anet, F. A. L., Stahle, C. J., and Hud, N. V., “Enzymatic behavior by intercalating molecules in a template-directed ligation reaction.”, Angew Chem Int Ed Engl, vol. 43, no. 15, pp. 2004-8, 2004.
C. C. Conwell and Hud, N. V., “Evidence that both kinetic and thermodynamic factors govern DNA toroid dimensions: effects of magnesium(II) on DNA condensation by hexammine cobalt(III).”, Biochemistry, vol. 43, no. 18, pp. 5380-7, 2004.
I. D. Vilfan, Conwell, C. C., and Hud, N. V., “Formation of native-like mammalian sperm cell chromatin with folded bull protamine.”, J Biol Chem, vol. 279, no. 19, pp. 20088-95, 2004.
N. V. Hud and Lynn, D. G., “From life's origins to a synthetic biology.”, Curr Opin Chem Biol, vol. 8, no. 6, pp. 627-8, 2004.
2003
S. S. Jain, Polak, M., and Hud, N. V., “Controlling nucleic acid secondary structure by intercalation: effects of DNA strand length on coralyne-driven duplex disproportionation.”, Nucleic Acids Res, vol. 31, no. 15, pp. 4608-15, 2003.
C. C. Conwell, Vilfan, I. D., and Hud, N. V., “Controlling the size of nanoscale toroidal DNA condensates with static curvature and ionic strength.”, Proc Natl Acad Sci U S A, vol. 100, no. 16, pp. 9296-301, 2003.
A. L. Coulberson, Hud, N. V., LeDoux, J. M., Vilfan, I. D., and Prausnitz, M. R., “Gene packaging with lipids, peptides and viruses inhibits transfection by electroporation in vitro.”, J Control Release, vol. 86, no. 2-3, pp. 361-70, 2003.
C. C. Conwell and Hud, N. V., “MgCl2 enhances cluster formation by nanoscale toroidal DNA condensates”, J Clust Sci, vol. 14, no. 2, pp. 115 - 122, 2003.
N. V. Hud and Plavec, J., “A unified model for the origin of DNA sequence-directed curvature.”, Biopolymers, vol. 69, no. 1, pp. 144-58, 2003.
2002
N. V. Hud and Feigon, J., “Characterization of divalent cation localization in the minor groove of the A(n)T(n) and T(n)A(n) DNA sequence elements by (1)H NMR spectroscopy and manganese(II).”, Biochemistry, vol. 41, no. 31, pp. 9900-10, 2002.
M. Polak and Hud, N. V., “Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne.”, Nucleic Acids Res, vol. 30, no. 4, pp. 983-92, 2002.
M. Crnugelj, Hud, N. V., and Plavec, J., “The solution structure of d(G(4)T(4)G(3))(2): a bimolecular G-quadruplex with a novel fold.”, J Mol Biol, vol. 320, no. 5, pp. 911-24, 2002.
2001
N. V. Hud and Downing, K. H., “Cryoelectron microscopy of lambda phage DNA condensates in vitreous ice: The fine structure of DNA toroids.”, Proc Natl Acad Sci U S A, vol. 98, no. 26, pp. 14925-30, 2001.
N. V. Hud and Polak, M., “DNA-cation interactions: The major and minor grooves are flexible ionophores.”, Curr Opin Struct Biol, vol. 11, no. 3, pp. 293-301, 2001.
J. Feigon, Butcher, S. E., Finger, L. D., and Hud, N. V., “Solution nuclear magnetic resonance probing of cation binding sites on nucleic acids.”, Methods Enzymol, vol. 338, pp. 400-20, 2001.

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