Publications

Found 12 results
Filters: Keyword is Thermodynamics  [Clear All Filters]
2013
T. M. Parker, Hohenstein, E. G., Parrish, R. M., Hud, N. V., and C Sherrill, D., “Quantum-mechanical analysis of the energetic contributions to π stacking in nucleic acids versus rise, twist, and slide.”, J Am Chem Soc, vol. 135, no. 4, pp. 1306-16, 2013.
2010
E. D. Horowitz, Engelhart, A. E., Chen, M. C., Quarles, K. A., Smith, M. W., Lynn, D. G., and Hud, N. V., “Intercalation as a means to suppress cyclization and promote polymerization of base-pairing oligonucleotides in a prebiotic world.”, Proc Natl Acad Sci U S A, vol. 107, no. 12, pp. 5288-93, 2010.
2009
N. V. Hud, “Mineral surfaces: a mixed blessing for the RNA world?”, Astrobiology, vol. 9, no. 2, pp. 253-5; discussion 256, 2009.
E. D. Horowitz, Lilavivat, S., Holladay, B. W., Germann, M. W., and Hud, N. V., “Solution structure and thermodynamics of 2',5' RNA intercalation.”, J Am Chem Soc, vol. 131, no. 16, pp. 5831-8, 2009.
2008
O. Persil Cetinkol, Engelhart, A. E., Nanjunda, R. K., W Wilson, D., and Hud, N. V., “Submicromolar, selective G-quadruplex ligands from one pot: thermodynamic and structural studies of human telomeric DNA binding by azacyanines.”, ChemBioChem, vol. 9, no. 12, pp. 1889-92, 2008.
2006
E. D. Horowitz and Hud, N. V., “Ethidium and proflavine binding to a 2',5'-linked RNA duplex.”, J Am Chem Soc, vol. 128, no. 48, pp. 15380-1, 2006.
H. D. Bean, Anet, F. A. L., Gould, I. R., and Hud, N. V., “Glyoxylate as a backbone linkage for a prebiotic ancestor of RNA.”, Orig Life Evol Biosph, vol. 36, no. 1, pp. 39-63, 2006.
I. D. Vilfan, Conwell, C. C., Sarkar, T., and Hud, N. V., “Time study of DNA condensate morphology: implications regarding the nucleation, growth, and equilibrium populations of toroids and rods.”, Biochemistry, vol. 45, no. 26, pp. 8174-83, 2006.
2005
N. V. Hud and Vilfan, I. D., “Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size.”, Annu Rev Biophys Biomol Struct, vol. 34, pp. 295-318, 2005.
2004
C. C. Conwell and Hud, N. V., “Evidence that both kinetic and thermodynamic factors govern DNA toroid dimensions: effects of magnesium(II) on DNA condensation by hexammine cobalt(III).”, Biochemistry, vol. 43, no. 18, pp. 5380-7, 2004.
2001
J. Feigon, Butcher, S. E., Finger, L. D., and Hud, N. V., “Solution nuclear magnetic resonance probing of cation binding sites on nucleic acids.”, Methods Enzymol, vol. 338, pp. 400-20, 2001.
1996
N. V. Hud, Smith, F. W., Anet, F. A., and Feigon, J., “The selectivity for K+ versus Na+ in DNA quadruplexes is dominated by relative free energies of hydration: a thermodynamic analysis by 1H NMR.”, Biochemistry, vol. 35, no. 48, pp. 15383-90, 1996.